Score |
Strand | Gene name |
Blattner ID |
Description |
EcoCyc link |
SwissProt comment |
| 1.369948 | + | yicP | b3665 | probable adenine deaminase (synthesis xanthine) |
EG11692 |
CATALYTIC ACTIVITY: ADENINE + H(2)O = HYPOXANTHINE + NH(3).
SIMILARITY: BELONGS TO THE ADENINE AMINASE FAMILY.
|
| 0.871169 | + | eaeH | b0297 | attaching and effacing protein, pathogenesis factor |
EG12161 |
SIMILARITY: STRONG, TO EAE PROTEIN OF E.COLI PATHOGENIC STRAIN
E2348/69.
|
 | | b0298 | b0298 | putative factor |
|
|
| | tra5_5 | b0299 | IS3 putative transposase |
|
|
| 0.684187 | + | yeeV | b2005 | orf, hypothetical protein |
EG13389 |
SIMILARITY: STRONG, TO E.COLI YPJF AND YKFI.
|
| | yeeW | b2006 | orf, hypothetical protein |
EG13390 |
|
| 0.668341 | + | b1455 | b1455 | orf, hypothetical protein |
EG13778 |
|
| 0.632465 | + | oppB | b1244 | oligopeptide transport permease protein |
EG10675 |
FUNCTION: PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM
FOR OLIGOPEPTIDES; PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF
THE SUBSTRATE ACROSS THE MEMBRANE.
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE.
SIMILARITY: WITH INTEGRAL MEMBRANE COMPONENTS OF OTHER BINDING-
PROTEIN-DEPENDENT TRANSPORT SYSTEMS. BELONGS TO THE OPPBC
SUBFAMILY.
|
| | oppC | b1245 | homolog of Salmonella oligopeptide transport permease protein |
EG10676 |
FUNCTION: PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM
FOR OLIGOPEPTIDES; PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF
THE SUBSTRATE ACROSS THE MEMBRANE.
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE.
SIMILARITY: WITH INTEGRAL MEMBRANE COMPONENTS OF OTHER BINDING-
PROTEIN-DEPENDENT TRANSPORT SYSTEMS. BELONGS TO THE OPPBC
SUBFAMILY.
|
| | oppD | b1246 | homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system |
EG10677 |
FUNCTION: PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM
FOR OLIGOPEPTIDES. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE
TRANSPORT SYSTEM.
SUBCELLULAR LOCATION: INNER MEMBRANE-ASSOCIATED.
SIMILARITY: BELONGS TO THE ATP-BINDING TRANSPORT PROTEIN FAMILY
(ABC TRANSPORTERS). OPPD AND OPPF SHOW AN EXTENSIVE HOMOLOGY WITH
EACH OTHER.
|
| | oppF | b1247 | homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system |
EG10678 |
FUNCTION: PART OF THE BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM
FOR OLIGOPEPTIDES. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE
TRANSPORT SYSTEM.
SUBCELLULAR LOCATION: INNER MEMBRANE-ASSOCIATED.
SIMILARITY: BELONGS TO THE ATP-BINDING TRANSPORT PROTEIN FAMILY
(ABC TRANSPORTERS). OPPD AND OPPF SHOW AN EXTENSIVE HOMOLOGY WITH
EACH OTHER.
|
| 0.609899 | + | yhfL | b3369 | orf, hypothetical protein |
EG12907 |
|
| 0.608888 | + | mcrA | b1159 | restriction of DNA at 5-methylcytosine residues; at locus of e14 element |
EG10573 |
FUNCTION: RESTRICTION OF 5-METHYL AND 5-HYDROXYMETHYLCYTOSINES AT
THE SPECIFIC DNA SEQUENCE C(ME)CGG.
|
| 0.603773 | + | b1044 | b1044 | orf, hypothetical protein |
EG13873 |
SIMILARITY: SOME, TO THE N-TERMINAL OF THE FIMA/PAPA FAMILY OF
FIMBRIA PROTEINS.
|
| | b1045 | b1045 | putative polyprotein |
|
|
| | ymdC | b1046 | putative synthase |
EG13875 |
SIMILARITY: BELONGS TO THE PHOSPHOLIPDASE D FAMILY. CARDIOLIPIN
SYNTHASE SUBFAMILY. STRONG, TO H.PYLORI HP0190.
|
| 0.600320 | + | tnaL | b3707 | tryptophanase leader peptide |
EG11276 |
|
| 0.524755 | + | yhhQ | b3471 | orf, hypothetical protein |
EG12217 |
SIMILARITY: STRONG, TO H.INFLUENZAE HI0862.
|
| | b3472 | b3472 | orf, hypothetical protein |
EG12218 |
FUNCTION: REQUIRED FOR PHAGE C1 ADSORPTION.
SUBCELLULAR LOCATION: PERIPLASMIC.
MISCELLANEOUS: MAY INTERACT WITH SDAC FOR PHAGE ADSORPTION.
|
| 0.434884 | + | slp | b3506 | outer membrane protein induced after carbon starvation |
EG11890 |
FUNCTION: THE INDUCTION OF SLP MAY HELP TO STABILIZE THE OUTER
MEMBRANE DURING CARBON STARVATION AND STATIONARY PHASE.
SUBCELLULAR LOCATION: ATTACHED TO THE OUTER MEMBRANE BY A LIPID
ANCHOR.
INDUCTION: INDUCED UPON STARVATION AND SLOWED GROWTH. CAMP/CRP-
INDEPENDENT.
|
| 0.428756 | + | b2659 | b2659 | orf, hypothetical protein |
EG13523 |
FUNCTION: MAY BE INVOLVED IN THE CONTROL OF UTILIZATION OF GAMA-
AMINOBUTYRIC ACID.
|
| | ygaF | b2660 | orf, hypothetical protein |
EG12387 |
|
| | gabD | b2661 | succinate-semialdehyde dehydrogenase, NADP-dependent activity |
EG11329 |
CATALYTIC ACTIVITY: SUCCINATE SEMIALDEHYDE + NAD(P)(+) + H(2)O
= SUCCINATE + NAD(P)H.
PATHWAY: 4-AMINOBUTYRATE (GABA) DEGRADATION PATHWAY.
SIMILARITY: BELONGS TO THE ALDEHYDE DEHYDROGENASES FAMILY.
|
| | gabT | b2662 | 4-aminobutyrate aminotransferase activity |
EG10361 |
CATALYTIC ACTIVITY: 4-AMINOBUTANOATE + 2-OXOGLUTARATE = SUCCINATE
SEMIALDEHYDE + L-GLUTAMATE.
COFACTOR: PYRIDOXAL PHOSPHATE.
PATHWAY: 4-AMINOBUTYRATE (GABA) DEGRADATION PATHWAY.
SUBUNIT: HOMODIMER.
INDUCTION: CATABOLITE REPRESSION BY GLUCOSE (REPRESSION RELIEVED
BY GABA).
SIMILARITY: BELONGS TO CLASS-III OF PYRIDOXAL-PHOSPHATE-DEPENDENT
AMINOTRANSFERASES.
|
| 0.415950 | + | ygjJ | b3079 | orf, hypothetical protein |
EG12721 |
|
| | ygjK | b3080 | putative isomerase |
EG12722 |
|
| 0.374731 | + | yicG | b3646 | orf, hypothetical protein |
EG11683 |
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (PROBABLE).
SIMILARITY: BELONGS TO THE UPF0126 FAMILY. STRONG, TO H.INFLUENZAE
HI1240.
|
| 0.366820 | + | adk | b0474 | adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity |
EG10032 |
FUNCTION: THIS SMALL UBIQUITOUS ENZYME IS ESSENTIAL FOR
MAINTENANCE AND CELL GROWTH.
CATALYTIC ACTIVITY: ATP + AMP = ADP + ADP.
SUBUNIT: MONOMER.
SUBCELLULAR LOCATION: CYTOPLASMIC.
SIMILARITY: BELONGS TO THE ADENYLATE KINASE FAMILY.
|
| 0.360105 | + | spr | b2175 | putative lipoprotein |
EG14076 |
SUBCELLULAR LOCATION: ATTACHED TO THE MEMBRANE BY A LIPID
ANCHOR (POTENTIAL).
SIMILARITY: BELONGS TO THE E.COLI NLPC / LISTERIA P60 FAMILY.
|
| 0.355399 | + | yciS | b1279 | orf, hypothetical protein |
EG13904 |
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL).
SIMILARITY: TO H.INFLUENZAE HI1222.
|
| | yciM | b1280 | putative heat shock protein |
EG12691 |
SIMILARITY: STRONG, TO H.INFLUENZAE HI1223.
|
| 0.350082 | + | b1964 | b1964 | putative outer membrane protein |
EG14042 |
SUBUNIT: HOMOTRIMER (BY SIMILARITY).
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. OUTER MEMBRANE
(BY SIMILARITY).
SIMILARITY: BELONGS TO THE OMPC/PHOE FAMILY OF PORINS.
CAUTION: THIS IS A CONCEPTUAL TRANSLATION, AN IN-FRAME STOP CODON
WAS READ OVER IN POSITION 162 AND TWO POTENTIAL FRAMESHIFTS WERE
CORRECTED.
|
| | b1965 | b1965 | orf, hypothetical protein |
|
|
| | b1966 | b1966 | putative outer membrane protein |
|
|
| 0.343627 | + | hrsA | b0731 | protein modification enzyme, induction of ompC |
EG13235 |
FUNCTION: INVOLVED IN THERMOINDUCTION OF OMPC.
CATALYTIC ACTIVITY: PROTEIN N-PHOSPHOHISTIDINE + SUGAR =
PROTEIN HISTIDINE + SUGAR PHOSPHATE.
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE
(POTENTIAL).
SIMILARITY: CONTAINS A PTS EIIA DOMAIN.
SIMILARITY: CONTAINS A PTS EIIB DOMAIN.
SIMILARITY: CONTAINS A PTS EIIC DOMAIN.
|
| | ybgG | b0732 | putative sugar hydrolase |
EG13236 |
|
| 0.341963 | + | ytfA | b4205 | orf, hypothetical protein |
EG12501 |
|
| 0.338354 | + | b1757 | b1757 | putative thiosulfate sulfur transferase |
EG14007 |
CATALYTIC ACTIVITY: THIOSULFATE + CYANIDE = SULFITE + THIOCYANATE.
SIMILARITY: BELONGS TO THE RHODANESE FAMILY.
|
| 0.337752 | + | b2880 | b2880 | orf, hypothetical protein |
EG13063 |
|
| | b2881 | b2881 | putative dehydrogenase |
|
|
| | ygfO | b2882 | putative transport protein |
EG13065 |
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (PROBABLE).
SIMILARITY: BELONGS TO THE XANTHINE/URACIL PERMEASES FAMILY.
|
| | ygfP | b2883 | orf, hypothetical protein |
EG13066 |
FUNCTION: CATALYZES THE HYDROLYTIC DEAMINATION OF GUANINE,
PRODUCING XANTHINE AND AMMONIA.
CATALYTIC ACTIVITY: GUANINE + H(2)O = XANTHINE + NH(3).
COFACTOR: CONTAINS 1 MOLE OF ZINC PER SUBUNIT.
PATHWAY: PURINE NUCLEOTIDE CATABOLISM.
SIMILARITY: BELONGS TO THE ATZ/TRZ FAMILY.
|
| | ygfQ | b2884 | orf, hypothetical protein |
EG13067 |
SIMILARITY: BELONGS TO THE YICO/YIEG/YJCD FAMILY. CORRESPONDS TO
THE N-TERMINAL PART; THE C-TERMINAL PART IS YGFR.
|
| | ygfR | b2885 | putative oxidoreductase |
EG13068 |
SIMILARITY: BELONGS TO THE YICO/YIEG/YJCD FAMILY. CORRESPONDS TO
THE C-TERMINAL PART; THE N-TERMINAL PART IS YGFQ.
|
| 0.336613 | + | ygiX | b3025 | putative 2-component transcriptional regulator |
EG13026 |
FUNCTION: PROBABLE MEMBER OF A TWO-COMPONENT REGULATORY SYSTEM
YGIX/YGIY.
SUBCELLULAR LOCATION: CYTOPLASMIC (POTENTIAL).
PTM: PHOSPHORYLATED BY YGIY (POTENTIAL).
SIMILARITY: STRONG, TO H.INFLUENZAE HI1708.
SIMILARITY: TO OTHER BACTERIAL REGULATORY PROTEINS INVOLVED IN
SIGNAL TRANSDUCTION.
|
| | ygiY | b3026 | putative 2-component sensor protein |
EG13027 |
FUNCTION: PROBABLE MEMBER OF A TWO-COMPONENT REGULATORY SYSTEM
YGIX/YGIY. MAY ACTIVATE YGIX BY PHOSPHORYLATION.
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE
(PROBABLE).
SIMILARITY: STRONG, TO H.INFLUENZAE HI1707.
SIMILARITY: TO OTHER PROKARYOTIC SENSORY TRANSDUCTION HISTIDINE
KINASES.
|
| 0.326594 | + | yghT | b2986 | orf, hypothetical protein |
EG13004 |
SIMILARITY: TO E.COLI YGHR AND YGHS.
|
| 0.324633 | + | gltF | b3214 | regulator of gltBDF operon, induction of Ntr enzymes |
EG11514 |
FUNCTION: INVOLVED IN INDUCTION OF THE SO-CALLED NTR ENZYMES IN
RESPONSE TO NITROGEN DEPRIVATION, AS WELL AS IN GLUTAMATE
BIOSYNTHESIS. MAY MEDIATE THE GLUTAMATE-DEPENDENT REPRESSION OF
THE GLT OPERON.
SIMILARITY: TO E.COLI YHCF.
|
| 0.307965 | + | b2505 | b2505 | putative outer membrane lipoprotein |
|
|
| | b2506 | b2506 | putative membrane protein |
EG14205 |
|
| 0.307582 | + | yjfI | b4181 | orf, hypothetical protein |
EG12484 |
|
| | yjfJ | b4182 | putative alpha helical protein |
EG12485 |
|
| | yjfK | b4183 | orf, hypothetical protein |
EG12486 |
|
| | yjfL | b4184 | orf, hypothetical protein |
EG12487 |
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL).
|
| | yjfM | b4185 | orf, hypothetical protein |
EG12488 |
|
| | yjfC | b4186 | putative synthetase/amidase |
EG11812 |
SIMILARITY: STRONG, TO THE N-TERMINAL OF E.COLI GSP AND TO E.COLI
YGIC.
|
| | aidB | b4187 | putative acyl coenzyme A dehydrogenase |
EG11811 |
INDUCTION: BY ALKYLATING AGENTS.
SIMILARITY: BELONGS TO THE ACYL-COA DEHYDROGENASES FAMILY.
|
| 0.307011 | + | yiiM | b3910 | orf, hypothetical protein |
EG11870 |
SIMILARITY: TO H.INFLUENZAE HI0278.
|
| 0.303798 | + | tauA | b0365 | taurine transport system periplasmic protein |
EG13300 |
FUNCTION: PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR
TAURINE.
SUBCELLULAR LOCATION: PERIPLASMIC (POTENTIAL).
SIMILARITY: TO SYNECHOCYSTIS PCC 6803 SLL0473.
|
| | tauB | b0366 | taurine ATP-binding component of a transport system |
EG13299 |
FUNCTION: PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR
TAURINE. PROBABLY RESPONSIBLE FOR ENERGY COUPLING TO THE TRANSPORT
SYSTEM.
SUBCELLULAR LOCATION: INNER MEMBRANE-ASSOCIATED (POTENTIAL).
SIMILARITY: BELONGS TO THE ATP-BINDING TRANSPORT PROTEIN FAMILY
(ABC TRANSPORTERS).
|
| | tauC | b0367 | taurine transport system permease protein |
EG13301 |
FUNCTION: PART OF A BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEM FOR
TAURINE. PROBABLY RESPONSIBLE FOR THE TRANSLOCATION OF THE
SUBSTRATE ACROSS THE MEMBRANE.
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE
(POTENTIAL).
SIMILARITY: WITH INTEGRAL MEMBRANE COMPONENTS OF OTHER BINDING-
PROTEIN-DEPENDENT TRANSPORT SYSTEMS. BELONGS TO THE CYSTW
SUBFAMILY.
|
| | tauD | b0368 | taurine dioxygenase, 2-oxoglutarate-dependent |
EG12423 |
FUNCTION: CONVERTS TAURINE AND ALPHA KETOGLUTARATE TO SULFITE,
AMINOACETALDEHYDE AND SUCCINATE. REQUIRED FOR THE UTILIZATION OF
TAURINE (2-AMINOETHANESULFONIC ACID) AS A SULFUR SOURCE. OPTIMAL
PH FOR ACTIVITY IS 6.9. PENTANE-SULFONIC ACID, 3-(N-
MORPHOLINO)PROPANESULFONIC ACID AND 1,3-DIOXO-2-
ISOINDOLINEETHANESULFONIC ACID ARE ALSO SUBSTRATES FOR THIS
ENZYME.
CATALYTIC ACTIVITY: TAURINE + 2-OXOGLUTARATE + O(2) = SULFITE +
AMINOACETALDEHYDE + SUCCINATE + CO(2).
COFACTOR: IRON AND ASCORBATE.
ENZYME REGULATION: DIVALENT METAL IONS INHIBITED.
PATHWAY: CATABOLISM OF TAURINE.
SUBUNIT: HOMODIMER.
INDUCTION: UNDER SULFUR STARVATION.
SIMILARITY: BELONGS TO THE TFDA FAMILY OF DIOXYGENASES.
CAUTION: REF.4 SEQUENCE DIFFERS FROM THAT SHOWN DUE TO
FRAMESHIFTS.
|
| 0.303445 | + | trkG | b1363 | trk system potassium uptake; part of Rac prophage |
EG11020 |
FUNCTION: LOW-AFFINITY POTASSIUM TRANSPORT SYSTEM. INTERACTS WITH
TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA. TRKE INCREASES THE
AFFINITY OF THE SYSTEM.
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE.
|
| | b1364 | b1364 | orf, hypothetical protein |
|
|
| | b1365 | b1365 | orf, hypothetical protein |
EG14296 |
|
| | ydaY | b1366 | orf, hypothetical protein |
EG13367 |
|
| | b1367 | b1367 | orf, hypothetical protein |
|
|
| 0.297229 | + | yohM | b2106 | orf, hypothetical protein |
EG14071 |
SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL).
SIMILARITY: TO M.JANNASCHII MJ1092 AND SOME, TO H.INFLUENZAE
HI1248.
|
| | b2107 | b2107 | orf, hypothetical protein |
EG14072 |
|
| 0.292357 | + | ydgA | b1614 | orf, hypothetical protein |
EG12457 |
SIMILARITY: TO E.COLI YIHF AND H.INFLUENZAE HI1236.
CAUTION: REF.1 SEQUENCE DIFFERS FROM THAT SHOWN FROM POSITION 422
ONWARD AND IS SHORTER (449 AA) DUE TO A FRAMESHIFT.
|
| 0.283449 | + | ycaL | b0909 | putative heat shock protein |
EG13133 |
SIMILARITY: BELONGS TO PEPTIDASE FAMILY M48 (ZINC
METALLOPROTEASE). STRONG, TO E.COLI YGGG.
|
| 0.278148 | + | greB | b3406 | transcription elongation factor and transcript cleavage |
EG11578 |
FUNCTION: NECESSARY FOR EFFICIENT RNA POLYMERASE TRANSCRIPTION
ELONGATION PAST TEMPLATE-ENCODED ARRESTING SITES. THE ARRESTING
SITES IN DNA HAVE THE PROPERTY OF TRAPPING A CERTAIN FRACTION
OF ELONGATING RNA POLYMERASES THAT PASS THROUGH, RESULTING IN
LOCKED TERNARY COMPLEXES. CLEAVAGE OF THE NASCENT TRANSCRIPT BY
CLEAVAGE FACTORS SUCH AS GREA OR GREB ALLOWS THE RESUMPTION OF
ELONGATION FROM THE NEW 3'TERMINUS. GREB RELEASES SEQUENCES OF
UP TO 9 NUCLEOTIDES IN LENGTH.
SIMILARITY: BELONGS TO THE GREA/GREB FAMILY.
|
| 0.272350 | + | yiiG | b3896 | orf, hypothetical protein |
EG11860 |
|