u_prommatches49

Gene list

Wadsworth clusters

Rajewsky clusters


Score

Strand

Gene name

Blattner ID

Description

EcoCyc link

SwissProt comment

2.300395+b2854b2854orf, hypothetical protein
2.239669+ybhHb0769orf, hypothetical protein EG13664 SIMILARITY: TO B.SUBTILIS YRAM.
ybhIb0770putative membrane pump protein EG13665 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE (PROBABLE). SIMILARITY: BELONGS TO THE NADC/P/PHO87 FAMILY OF TRANSPORTERS. SODIT1 SUBFAMILY. STRONG, TO H.INFLUENZAE HI0020.
1.781861+yaiCb0385orf, hypothetical protein EG11257 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL). SIMILARITY: BELONGS TO THE YAIC / YFIN (E.COLI), YHCK (B.SUBTILIS) FAMILY.
1.738908+ycgLb1179orf, hypothetical protein EG13893 SIMILARITY: STRONG, TO H.INFLUENZAE HI1446.
b1180b1180putative isomerase EG13894 SIMILARITY: BELONGS TO THE FAH / HPEC FAMILY.
ycgNb1181orf, hypothetical protein EG13895 SIMILARITY: STRONG, TO H.INFLUENZAE HI1355.
1.709955+mcrAb1159restriction of DNA at 5-methylcytosine residues; at locus of e14 element EG10573 FUNCTION: RESTRICTION OF 5-METHYL AND 5-HYDROXYMETHYLCYTOSINES AT THE SPECIFIC DNA SEQUENCE C(ME)CGG.
1.390189+gclb0507glyoxylate carboligase EG11583 FUNCTION: CATALYZES THE CONDENSATION OF TWO MOLECULES OF GLYOXYLATE TO GIVE 2-HYDROXY-3-OXOPROPANOATE (ALSO TERMED TARTRONATE SEMIALDEHYDE). CATALYTIC ACTIVITY: 2 GLYOXYLATE = TARTRONATE SEMIALDEHYDE + CO(2). COFACTOR: THIAMINE PYROPHOSPHATE, AND MAGNESIUM ION. PATHWAY: GLYOXYLATE CATABOLISM. SUBUNIT: HOMOTETRAMER. INDUCTION: BY GLYOXYLATE. SIMILARITY: WITH OTHER ENZYMES WHICH REQUIRE TPP.
gipb0508glyoxylate-induced protein EG11584 FUNCTION: CATALYZES THE REVERSIBLE ISOMERIZATION BETWEEN HYDROXYPYRUVATE AND 2-HYDROXY-3-OXOPROPANOATE (ALSO TERMED TARTRONATE SEMIALDEHYDE). CATALYTIC ACTIVITY: HYDROXYPYRUVATE = 2-HYDROXY-3-OXOPROPANOATE. SUBUNIT: HOMODIMER. INDUCTION: BY GLYOXYLATE. SIMILARITY: BELONGS TO THE HYI FAMILY.
ybbQb0509putative oxidoreductase EG13265 CATALYTIC ACTIVITY: (R)-GLYCERATE + NAD(P)(+) = 2-HYDROXY-3- OXOPROPANOATE + NAD(P)H. PATHWAY: GLYOXYLATE CATABOLISM. INDUCTION: BY GLYOXYLATE. SIMILARITY: BELONGS TO THE 3-HYDROXYISOBUTYRATE DEHYDROGENASE FAMILY.
ybbVb0510orf, hypothetical protein EG13617
ybbWb0511putative transport protein EG13618 FUNCTION: TRANSPORT OF ALLANTOIN (BY SIMILARITY). SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE (POTENTIAL). INDUCTION: BY GLYOXYLATE. SIMILARITY: BELONGS TO THE ALLANTOIN PERMEASE FAMILY.
ybbXb0512putative hydrolase EG13619 FUNCTION: INVOLVED IN THE ANAEROBIC UTILIZATION OF ALLANTOIN. CATALYTIC ACTIVITY: ALLANTOIN + H(2)O = ALLANTOATE. COFACTOR: ZINC (BY SIMILARITY). PATHWAY: FIRST STEP IN THE DEGRADATION OF ALLANTOIN (PURINE CATABOLISM). INDUCTION: BY GLYOXYLATE. SIMILARITY: BELONGS TO THE DHOASE FAMILY.
ybbYb0513putative transport EG13620 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL). INDUCTION: BY GLYOXYLATE. SIMILARITY: BELONGS TO THE XANTHINE/URACIL PERMEASES FAMILY. STRONG, TO B.SUBTILIS YWDJ.
ybbZb0514orf, hypothetical protein EG13621 CATALYTIC ACTIVITY: ATP + (R)-GLYCERATE = ADP + 3-PHOSPHO-(R)- GLYCERATE. PATHWAY: GLYOXYLATE CATABOLISM. INDUCTION: BY GLYOXYLATE. SIMILARITY: BELONGS TO THE UPF0068 FAMILY.
1.357430+ydfKb1544orf, hypothetical protein
1.330123+b2446b2446orf, hypothetical protein EG14176
b2447b2447orf, hypothetical protein EG14177
1.314086+yjjNb4358putative oxidoreductase EG12590 SIMILARITY: BELONGS TO THE ZINC-CONTAINING ALCOHOL DEHYDROGENASE FAMILY.
1.284543+yfbLb2271putative aminopeptidase EG14096
yfbMb2272orf, hypothetical protein EG14097
1.272797+b2275b2275orf, hypothetical protein EG14100
1.114255+b1964b1964putative outer membrane protein EG14042 SUBUNIT: HOMOTRIMER (BY SIMILARITY). SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. OUTER MEMBRANE (BY SIMILARITY). SIMILARITY: BELONGS TO THE OMPC/PHOE FAMILY OF PORINS. CAUTION: THIS IS A CONCEPTUAL TRANSLATION, AN IN-FRAME STOP CODON WAS READ OVER IN POSITION 162 AND TWO POTENTIAL FRAMESHIFTS WERE CORRECTED.
b1965b1965orf, hypothetical protein
b1966b1966putative outer membrane protein
1.015050+b2443b2443orf, hypothetical protein EG14173
0.975352+dicAb1570regulator of dicB EG10226 FUNCTION: THIS PROTEIN IS A REPRESSOR OF DIVISION INHIBITION GENE DICB.
0.973879+ydaSb1357orf, hypothetical protein EG13361
ydaTb1358orf, hypothetical protein EG13362
ydaUb1359orf, hypothetical protein EG13363
b1360b1360putative DNA replication factor
ydaWb1361orf, hypothetical protein EG13365
b1362b1362putative Rac prophage endopeptidase EG13366 FUNCTION: NECESSARY FOR HOST CELL LYSIS. IT IS BELIEVED TO CODE FOR AN ENDOPEPTIDASE THAT CLEAVES THE AMINO-CARBOXYL CROSS-LINK BETWEEN THE DIAMINOPIMELIC ACID AND D-ALANINE RESIDUES IN THE MUREIN COMPONENT OF THE BACTERIAL CELL WALL (BY SIMILARITY). SIMILARITY: BELONGS TO PEPTIDASE FAMILY U8. STRONG, TO LAMBDOID PHAGES ENDOPEPTIDASES.
trkGb1363trk system potassium uptake; part of Rac prophage EG11020 FUNCTION: LOW-AFFINITY POTASSIUM TRANSPORT SYSTEM. INTERACTS WITH TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA. TRKE INCREASES THE AFFINITY OF THE SYSTEM. SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE.
b1364b1364orf, hypothetical protein
b1365b1365orf, hypothetical protein EG14296
ydaYb1366orf, hypothetical protein EG13367
b1367b1367orf, hypothetical protein
0.953622+b2659b2659orf, hypothetical protein EG13523 FUNCTION: MAY BE INVOLVED IN THE CONTROL OF UTILIZATION OF GAMA- AMINOBUTYRIC ACID.
ygaFb2660orf, hypothetical protein EG12387
gabDb2661succinate-semialdehyde dehydrogenase, NADP-dependent activity EG11329 CATALYTIC ACTIVITY: SUCCINATE SEMIALDEHYDE + NAD(P)(+) + H(2)O = SUCCINATE + NAD(P)H. PATHWAY: 4-AMINOBUTYRATE (GABA) DEGRADATION PATHWAY. SIMILARITY: BELONGS TO THE ALDEHYDE DEHYDROGENASES FAMILY.
gabTb26624-aminobutyrate aminotransferase activity EG10361 CATALYTIC ACTIVITY: 4-AMINOBUTANOATE + 2-OXOGLUTARATE = SUCCINATE SEMIALDEHYDE + L-GLUTAMATE. COFACTOR: PYRIDOXAL PHOSPHATE. PATHWAY: 4-AMINOBUTYRATE (GABA) DEGRADATION PATHWAY. SUBUNIT: HOMODIMER. INDUCTION: CATABOLITE REPRESSION BY GLUCOSE (REPRESSION RELIEVED BY GABA). SIMILARITY: BELONGS TO CLASS-III OF PYRIDOXAL-PHOSPHATE-DEPENDENT AMINOTRANSFERASES.
0.952685+nrdAb2234ribonucleoside diphosphate reductase 1, alpha subunit, B1 EG10660 FUNCTION: CATALYZES THE BIOSYNTHESIS OF DEOXYRIBONUCLEOTIDES FROM THE CORRESPONDING RIBONUCLEOTIDES, PRECURSORS THAT ARE NECESSARY FOR DNA SYNTHESIS. R1 CONTAINS THE BINDING SITES FOR BOTH SUBSTRATES AND ALLOSTERIC EFFECTORS AND CARRIES OUT THE ACTUAL REDUCTION OF THE RIBONUCLEOTIDE. CATALYTIC ACTIVITY: 2'-DEOXYRIBONUCLEOSIDE DIPHOSPHATE + OXIDIZED THIOREDOXIN + H(2)O = RIBONUCLEOSIDE DIPHOSPHATE + REDUCED THIOREDOXIN. PATHWAY: FIRST REACTION IN THE DNA REPLICATION PATHWAY. SUBUNIT: TETRAMER OF TWO ALPHA AND TWO BETA CHAINS. THE B1 PROTEIN IS A DIMER OF ALPHA CHAINS. MISCELLANEOUS: E.COLI PRODUCES TWO SEPARATE CLASS I ENZYMES. THIS ONE IS THE FUNCTIONAL ENZYME DURING GROWTH. SIMILARITY: BELONGS TO THE RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE LARGE CHAIN FAMILY. CAUTION: REF.2 SEQUENCE WAS INCORRECT.
0.942673-yfaLb2233putative ATP-binding component of a transport system EG12850 SIMILARITY: TO E.COLI YDEK. CAUTION: REF.3 SEQUENCE DIFFERS EXTENSIVELY FROM THAT SHOWN BY MANY FRAMESHIFTS.
0.915102+yqjGb3102putative transferase EG12746 SIMILARITY: BELONGS TO THE YGR154C/YKR076W/YMR251W (YEAST) / YQJG (E.COLI) FAMILY.
0.875046-ybiMb0806orf, hypothetical protein EG13318 SIMILARITY: BELONGS TO THE YAHO/YBIJ/YBIM/YCFR/YHCN FAMILY.
0.874010+yhhZb3442orf, hypothetical protein EG12946 SIMILARITY: STRONG, TO MAJOR EXPORTED PROTEIN FROM PSEUDOMONAS SYRINGAE (PV. RIBICOLA).
yrhAb3443orf, hypothetical protein EG12947
insA_6b3444IS1 protein InsA
insB_6b3445IS1 protein InsB EG14370
0.872530+codBb0336cytosine permease/transport EG11327 FUNCTION: REQUIRED FOR CYTOSINE TRANSPORT INTO THE CELL. SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE.
codAb0337cytosine deaminase EG11326 CATALYTIC ACTIVITY: CYTOSINE + H(2)O = URACIL + NH(3). COFACTOR: SEEMS TO REQUIRE IRON OR ANOTHER DIVALENT METAL ION FOR CATALYSIS. SUBUNIT: HOMOTETRAMER.
0.840219+lolAb0891periplasmic protein effects translocation of lipoproteins from inner membrane to outer EG12684 FUNCTION: PARTICIPATES IN THE TRANSLOCATION OF LIPOPROTEINS FROM THE INNER MEMBRANE TO THE OUTER MEMBRANE. ONLY FORMS A COMPLEX WITH A LIPOPROTEIN IF THE RESIDUE AFTER THE N-TERMINAL CYS IS NOT AN ASPARTATE (THE ASP ACTS AS A TARGETING SIGNAL TO INDICATE THAT THE LIPOPROTEIN SHOULD STAY IN THE INNER MEMBRANE). SUBCELLULAR LOCATION: PERIPLASMIC. SIMILARITY: BELONGS TO THE LOLA FAMILY.
ycaJb0892putative polynucleotide enzyme EG12690 SIMILARITY: STRONG, TO H.INFLUENZAE HI1590 AND C.BURNETII HOMOLOG. SIMILARITY: TO YEAST YNL218W. CAUTION: REF.4 SEQUENCE DIFFERS FROM THAT SHOWN DUE TO A FRAMESHIFT IN POSITION 370.
serSb0893serine tRNA synthetase; also charges selenocystein tRNA with serine EG10947 CATALYTIC ACTIVITY: ATP + L-SERINE + TRNA(SER) = AMP + PYROPHOSPHATE + L-SERYL-TRNA(SER). SUBUNIT: HOMODIMER. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY.
0.788300+yjjQb4365putative regulator EG12593 SIMILARITY: TO THE C-TERMINAL OF E.COLI RCSB.
bglJb43662-component transcriptional regulator EG12594 FUNCTION: MUTATION IN BGLJ ACTIVATES THE BGL OPERON. SIMILARITY: BELONGS TO THE LUXR/UHPA FAMILY OF TRANSCRIPTIONAL REGULATORS.
0.781874+b1445b1445orf, hypothetical protein EG13767 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL). SIMILARITY: STRONG, TO E.COLI YJDO.
b1446b1446orf, hypothetical protein EG13768
0.775178+ygjJb3079orf, hypothetical protein EG12721
ygjKb3080putative isomerase EG12722
0.744688+yihEb3859orf, hypothetical protein EG11831
dsbAb3860protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction EG11297 FUNCTION: REQUIRED FOR DISULFIDE BOND FORMATION IN SOME PERIPLASMIC PROTEINS SUCH AS PHOA OR OMPA. ACTS BY TRANSFERRING ITS DISULFIDE BOND TO OTHER PROTEINS AND IS REDUCED IN THE PROCESS. DSBA IS REOXIDIZED BY DSBB. IT IS REQUIRED FOR PILUS BIOGENESIS. SUBCELLULAR LOCATION: PERIPLASMIC. SIMILARITY: BELONGS TO THE THIOREDOXIN FAMILY. DSBA SUBFAMILY.
yihFb3861putative GTP-binding protein EG11832 SIMILARITY: TO E.COLI YDGA AND H.INFLUENZAE HI1236.
0.739432-yceLb1065orf, hypothetical protein EG13878 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE (PROBABLE). SIMILARITY: BELONGS TO THE MAJOR FACILITATOR FAMILY (ALSO KNOWN AS THE DRUG RESISTANCE TRANSLOCASE FAMILY).
grxBb1064glutaredoxin 2 EG12688 FUNCTION: INVOLVED IN REDUCING SOME DISULFIDES IN A COUPLED SYSTEM WITH GLUTATHIONE REDUCTASE. DOES NOT ACT AS HYDROGEN DONOR FOR RIBONUCLEOTIDE REDUCTASE. SIMILARITY: BELONGS TO THE GLUTAREDOXIN FAMILY.
yceBb1063orf, hypothetical protein EG11117
pyrCb1062dihydro-orotase EG10806 CATALYTIC ACTIVITY: DIHYDROOROTATE + H(2)O = N-CARBAMOYL- L-ASPARTATE. COFACTOR: THIS ENZYME TIGHTLY BINDS ONE ZINC ATOM PER CHAIN WHICH IS REQUIRED FOR THE CATALYTIC MECHANISM. IT ALSO BINDS WEAKLY TO TWO OTHERS ZINCS WHICH ARE NOT ESSENTIAL FOR ACTIVITY. PATHWAY: THIRD STEP IN PYRIMIDINE BIOSYNTHESIS. SUBUNIT: HOMODIMER. SIMILARITY: BELONGS TO THE DHOASE FAMILY. SUBFAMILY 1.
dinIb1061damage-inducible protein I EG12670 FUNCTION: INVOLVED IN SOS REGULATION. INHIBITS RECA BY PREVENTING RECA TO BIND SSDNA. CAN DISPLACE SSDNA FROM RECA. SIMILARITY: BELONGS TO THE DINI FAMILY.
0.708075+secAb0098preprotein translocase; secretion protein EG10936 FUNCTION: INVOLVED IN PROTEIN EXPORT. INTERACTS WITH THE SECY/SECE SUBUNITS. SECA HAS A CENTRAL ROLE IN COUPLING THE HYDROLYSIS OF ATP TO THE TRANSFER OF PRE-SECRETORY PERIPLASMIC AND OUTER MEMBRANE PROTEINS ACROSS THE MEMBRANE. SUBUNIT: PART OF THE PROKARYOTIC PROTEIN TRANSLOCATION APPARATUS WHICH COMPRISE SECA, SECB, SECD, SECE, SECF, SECG AND SECY. SUBCELLULAR LOCATION: CYTOPLASMIC SIDE OF PLASMA MEMBRANE. SIMILARITY: BELONGS TO THE SECA FAMILY.
mutTb00997,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions EG10626 FUNCTION: INVOLVED IN THE GO SYSTEM RESPONSIBLE FOR REMOVING AN OXIDATIVELY DAMAGED FORM OF GUANINE (7,8-DIHYDRO-8-OXOGUANINE) FROM DNA AND THE NUCLEOTIDE POOL. 8-OXO-DGTP IS INSERTED OPPOSITE DA AND DC RESIDUES OF TEMPLATE DNA WITH ALMOST EQUAL EFFICIENCY THUS LEADING TO A.T TO G.C TRANSVERSIONS. MUTT SPECIFICALLY DEGRADES 8-OXO-DGTP TO THE MONOPHOSPHATE. CATALYTIC ACTIVITY: 8-OXO-DGTP + H(2)O = 8-OXO-DGMP + PYROPHOSPHATE. COFACTOR: REQUIRES MAGNESIUM. SUBUNIT: MONOMER. SIMILARITY: BELONGS TO THE NUDIX HYDROLASE FAMILY.
0.695422+ispBb3187octaprenyl diphosphate synthase EG10017 FUNCTION: SUPPLIES OCTAPRENYL DIPHOSPHATE, THE PRECURSOR FOR THE SIDE CHAIN OF THE ISOPRENOID QUINONES UBIQUINONE AND MENAQUINONE. SIMILARITY: BELONGS TO THE FPP/GGPP SYNTHETASES FAMILY.
0.691605+rimJb1066acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 EG10851 FUNCTION: THIS ENZYME ACETYLATES THE N-TERMINAL ALANINE OF RIBOSOMAL PROTEIN S5. PLAYS ALSO A ROLE IN THE TEMPERATURE REGULATION OF PAP PILIN TRANSCRIPTION. CATALYTIC ACTIVITY: ACETYL-COA + RIBOSOMAL-PROTEIN L-ALANINE = COA + RIBOSOMAL-PROTEIN N-ACETYL-L-ALANINE. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: BELONGS TO THE ACETYLTRANSFERASE FAMILY. RIMJ SUBFAMILY.
yceHb1067orf, hypothetical protein EG11537 CAUTION: REF.1 SEQUENCE DIFFERS FROM THAT SHOWN DUE TO FRAMESHIFTS IN POSITION 110 AND 211. CAUTION: REF.4 SEQUENCE DIFFERS FROM THAT SHOWN DUE TO FRAMESHIFTS IN POSITION 110 AND 118.
mviMb1068putative virulence factor EG13879 SIMILARITY: TO S.TYPHIMURIUM MVIM.
mviNb1069putative virulence factor EG13880 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL). SIMILARITY: BELONGS TO THE MVIN FAMILY.
0.668693-dsdCb2364D-serine dehydratase (deaminase) transcriptional activator EG13161 FUNCTION: REGULATES THE EXPRESSION OF THE DSD OPERON FOR D-SERINE DEAMINASE (DSDA). SIMILARITY: BELONGS TO THE LYSR FAMILY OF TRANSCRIPTIONAL REGULATORS.
0.651553+yjeTb4176orf, hypothetical protein EG12482 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL).
purAb4177adenylosuccinate synthetase EG10790 FUNCTION: PLAYS AN IMPORTANT ROLE IN THE DE NOVO PATHWAY OF PURINE NUCLEOTIDE BIOSYNTHESIS. CATALYTIC ACTIVITY: GTP + IMP + L-ASPARTATE = GDP + ORTHOPHOSPHATE + ADENYLOSUCCINATE. PATHWAY: FIRST COMMITTED STEP IN AMP BIOSYNTHESIS. SUBUNIT: HOMODIMER. SIMILARITY: BELONGS TO THE ADENYLOSUCCINATE SYNTHETASE FAMILY.
0.650988+b2071b2071orf, hypothetical protein EG14053
0.627955+yafMb0228orf, hypothetical protein EG13150 SIMILARITY: STRONG, TO H.INFLUENZAE HI0217.