Newly-identified clusters

Known E. coli regulons

Consensus

Contributing sequences

All Wadsworth matches

E. coli upstream matches

Whole-genome matches

***CCGT*GAACCTGATC*GG*TAA*A clus0 cluster0: data set matches promoter0 cluster0: genome matches
***ATGTTA*CG*TAACATTAT**A*A clus1 cluster1: data set matches promoter1 cluster1: genome matches
T*TTCGGTTC*TA*CATGA*GT*GA*T clus2 cluster2: data set matches promoter2 cluster2: genome matches
******AA*CACTATATAT*GTGTTT* clus3 cluster3: data set matches promoter3 cluster3: genome matches
*C***C*GATTA**AGTC*G*****TT clus4 cluster4: data set matches promoter4 cluster4: genome matches
AAAA**CC***TT****GGG*TTTTTT clus5 cluster5: data set matches promoter5 cluster5: genome matches
TTCC*T*GG**T*CG*ATCCG****G* clus6 cluster6: data set matches promoter6 cluster6: genome matches
C***A*CA**TG*T**A***T*T**TT clus7 cluster7: data set matches promoter7 cluster7: genome matches
****T*AGAAGG****TGCTCT*TCCA clus8 cluster8: data set matches promoter8 cluster8: genome matches
***TG*TA*AAT****C***ATTTTA* clus9 cluster9: data set matches promoter9 cluster9: genome matches
AA**G**TATAATA**C*****T**** clus10 cluster10: data set matches promoter10 cluster10: genome matches
****A*TGC*C*A*A***G*GCA**** clus11 cluster11: data set matches promoter11 cluster11: genome matches
******AA**CGC*TT***GCGC*TT* clus12 cluster12: data set matches promoter12 cluster12: genome matches
**TGC**T*AT*ACAAAA***C***** clus13 cluster13: data set matches promoter13 cluster13: genome matches
CG*C**GCAAGCCC*C*AGCGC***** clus14 cluster14: data set matches promoter14 cluster14: genome matches
*A*AGGCGG***A*****C*CCTTTTT clus15 cluster15: data set matches promoter15 cluster15: genome matches
**ATAA*CCT*T**A****A**GGTTT clus16 cluster16: data set matches promoter16 cluster16: genome matches
*A**T*AGC*AACA**TGTT*GCT*** clus17 cluster17: data set matches promoter17 cluster17: genome matches
****A****AAA*****ATTTT*G*TT clus18 cluster18: data set matches promoter18 cluster18: genome matches
***A***AA*CG*TTCGAT******** clus19 cluster19: data set matches promoter19 cluster19: genome matches
*G*CA**A*GG***TG**G**GC*GG* clus20 cluster20: data set matches promoter20 cluster20: genome matches
*TC**TA***T*ATTCA*TA*****A* clus21 cluster21: data set matches promoter21 cluster21: genome matches
*T**GGTATACT*C**TCC*GT****G clus22 cluster22: data set matches promoter22 cluster22: genome matches
AAAA*CCCC*C*****GG*GG***TTT clus23 cluster23: data set matches promoter23 cluster23: genome matches
A**A*ATGGGG*****T****CC*TTT clus24 cluster24: data set matches promoter24 cluster24: genome matches
******G*TAA**TT**CCGC****** clus25 cluster25: data set matches promoter25 cluster25: genome matches
***AAAA**TT*CG**A**TTTTTTTT clus26 cluster26: data set matches promoter26 cluster26: genome matches
AAAA*GC**T*TT**T****TTT**** clus27 cluster27: data set matches promoter27 cluster27: genome matches
*****A*****AAAA*TTT****A*** clus28 cluster28: data set matches promoter28 cluster28: genome matches
G**ATGCG*CG**C*CACGA*GC**** clus29 cluster29: data set matches promoter29 cluster29: genome matches
**C***CGGC*****GCGG*CG****A clus30 cluster30: data set matches promoter30 cluster30: genome matches
****A**T*GTAAATTA***TCCA*T* clus31 cluster31: data set matches promoter31 cluster31: genome matches
A****T*A*T*AAA**T*TT*A***** clus32 cluster32: data set matches promoter32 cluster32: genome matches
***TT*T*AAAATT**TTT***AAT*A clus33 cluster33: data set matches promoter33 cluster33: genome matches
****A***T****GGC****AA*T*T* clus34 cluster34: data set matches promoter34 cluster34: genome matches
***ATTTTTT***AAAA********** clus35 cluster35: data set matches promoter35 cluster35: genome matches
********TT*TG**A*AAT**GC*** clus36 cluster36: data set matches promoter36 cluster36: genome matches
***T*ATTTATT***T*AATAAA*T*A clus37 cluster37: data set matches promoter37 cluster37: genome matches
**TTTTA*GA***TT**CT*AAAA*** clus38 cluster38: data set matches promoter38 cluster38: genome matches
***T**TT*TTAGCG*GCTAA*AA*** clus39 cluster39: data set matches promoter39 cluster39: genome matches
A*AA*G**G*AA**TG****G*TTTT* clus40 cluster40: data set matches promoter40 cluster40: genome matches
TG**CT*CTCAT**A**AG******** clus41 cluster41: data set matches promoter41 cluster41: genome matches
****G*CG*TGG*AACA*CG******* clus42 cluster42: data set matches promoter42 cluster42: genome matches
**G**GC*G*CGC**CG***GCC**** clus43 cluster43: data set matches promoter43 cluster43: genome matches
TTT*C*GC**T*T****GA**A***C* clus44 cluster44: data set matches promoter44 cluster44: genome matches
TTTTTT*************AAAAA*** clus45 cluster45: data set matches promoter45 cluster45: genome matches
*****AAAAAAAT*TTTTTT******* clus46 cluster46: data set matches promoter46 cluster46: genome matches
****TG**T**CT****CATG**G**G clus47 cluster47: data set matches promoter47 cluster47: genome matches
****A**A**TGC*****CAA*TG*TG clus48 cluster48: data set matches promoter48 cluster48: genome matches
TT*T*G**A***A*****A*AAT**** clus49 cluster49: data set matches promoter49 cluster49: genome matches
****A***T*A**AC*T**T*AT**** clus50 cluster50: data set matches promoter50 cluster50: genome matches
***A*A*ATA***TTAT**AT*TAT** clus51 cluster51: data set matches promoter51 cluster51: genome matches
******AAAAA******TTTT****** clus52 cluster52: data set matches promoter52 cluster52: genome matches
***AAAAA******T*TTT******** clus53 cluster53: data set matches promoter53 cluster53: genome matches
T*AA**T**ATT*AAAAT***T*T*** clus54 cluster54: data set matches promoter54 cluster54: genome matches
T*****A*C**CCATCAGG*AC***** clus55 cluster55: data set matches promoter55 cluster55: genome matches
******TG***AA*AT*TT****A*** clus56 cluster56: data set matches promoter56 cluster56: genome matches
*AA*A***A****TA*A**T**T**** clus57 cluster57: data set matches promoter57 cluster57: genome matches
**T**T***C**C**G**G**GA**** clus58 cluster58: data set matches promoter58 cluster58: genome matches
*T****A*A*T*TT***GA*AA****G clus59 cluster59: data set matches promoter59 cluster59: genome matches
*AAA***T**A**AAA***A*TTTT** clus60 cluster60: data set matches promoter60 cluster60: genome matches
*AA******A*GA*T*AC**TGC**** clus61 cluster61: data set matches promoter61 cluster61: genome matches
********T*T**A*A*AT*AA*A*** clus62 cluster62: data set matches promoter62 cluster62: genome matches
*******AAAA***C*****TTTT*** clus63 cluster63: data set matches promoter63 cluster63: genome matches
********GCG**TT**AA****C*** clus64 cluster64: data set matches promoter64 cluster64: genome matches
****AAAAA**G******TTTT***** clus65 cluster65: data set matches promoter65 cluster65: genome matches
**T**AAA*CTCA****T**G*****T clus66 cluster66: data set matches promoter66 cluster66: genome matches
****G*AA*A**G*CGCG*CTT**TT* clus67 cluster67: data set matches promoter67 cluster67: genome matches
*AAAAA****G***A**C*C***TTTT clus68 cluster68: data set matches promoter68 cluster68: genome matches
*****AA*A*T****TTT********* clus69 cluster69: data set matches promoter69 cluster69: genome matches
*C*GC*GA**A*GG*T*T*CCG**G** clus70 cluster70: data set matches promoter70 cluster70: genome matches
TT*T**TGAAT***TTCA****AA*** clus71 cluster71: data set matches promoter71 cluster71: genome matches
*********AAAA****TTTTT*A*** clus72 cluster72: data set matches promoter72 cluster72: genome matches
****TTT*T***A*AATA*G****A** clus73 cluster73: data set matches promoter73 cluster73: genome matches
**TAAAA*T******A*TTTT****** clus74 cluster74: data set matches promoter74 cluster74: genome matches
**TTT****A**T****AAAA****** clus75 cluster75: data set matches promoter75 cluster75: genome matches
********TTT******AAA******* clus76 cluster76: data set matches promoter76 cluster76: genome matches
**T*TTTCA******G****GA*A*** clus77 cluster77: data set matches promoter77 cluster77: genome matches
***A**GCCGCC*T**CGGTG*T**** clus78 cluster78: data set matches promoter78 cluster78: genome matches
C***C*********A*T**G*G*G*TG clus79 cluster79: data set matches promoter79 cluster79: genome matches
*******TTT**A*TC*AAA******* clus80 cluster80: data set matches promoter80 cluster80: genome matches
*******T*TTTA***A*TAAA***A* clus81 cluster81: data set matches promoter81 cluster81: genome matches
**AAA*******T**A*******TTT* clus82 cluster82: data set matches promoter82 cluster82: genome matches
*TTTTT******A********G**AAA clus83 cluster83: data set matches promoter83 cluster83: genome matches
T***GC*****C*****C*G*AA**GC clus84 cluster84: data set matches promoter84 cluster84: genome matches
A***AA*AA*A*TTTT*TT***T**** clus85 cluster85: data set matches promoter85 cluster85: genome matches
***AAA****AA*******TTTT**** clus86 cluster86: data set matches promoter86 cluster86: genome matches
*******T*A******G*TAA****** clus87 cluster87: data set matches promoter87 cluster87: genome matches
******CGC**C**C***GCG**GC** clus88 cluster88: data set matches promoter88 cluster88: genome matches
****T***C*C**********G***AA clus89 cluster89: data set matches promoter89 cluster89: genome matches
****AA*AA**G*A*****TCC***** clus90 cluster90: data set matches promoter90 cluster90: genome matches
***AA*A****AA*****TT******* clus91 cluster91: data set matches promoter91 cluster91: genome matches
A******A*************T***** clus92 cluster92: data set matches promoter92 cluster92: genome matches
***AT********T******AT***** clus93 cluster93: data set matches promoter93 cluster93: genome matches