u_prommatches19

Gene list

Wadsworth clusters

Rajewsky clusters


Score

Strand

Gene name

Blattner ID

Description

EcoCyc link

SwissProt comment

1.646353+nrdAb2234ribonucleoside diphosphate reductase 1, alpha subunit, B1 EG10660 FUNCTION: CATALYZES THE BIOSYNTHESIS OF DEOXYRIBONUCLEOTIDES FROM THE CORRESPONDING RIBONUCLEOTIDES, PRECURSORS THAT ARE NECESSARY FOR DNA SYNTHESIS. R1 CONTAINS THE BINDING SITES FOR BOTH SUBSTRATES AND ALLOSTERIC EFFECTORS AND CARRIES OUT THE ACTUAL REDUCTION OF THE RIBONUCLEOTIDE. CATALYTIC ACTIVITY: 2'-DEOXYRIBONUCLEOSIDE DIPHOSPHATE + OXIDIZED THIOREDOXIN + H(2)O = RIBONUCLEOSIDE DIPHOSPHATE + REDUCED THIOREDOXIN. PATHWAY: FIRST REACTION IN THE DNA REPLICATION PATHWAY. SUBUNIT: TETRAMER OF TWO ALPHA AND TWO BETA CHAINS. THE B1 PROTEIN IS A DIMER OF ALPHA CHAINS. MISCELLANEOUS: E.COLI PRODUCES TWO SEPARATE CLASS I ENZYMES. THIS ONE IS THE FUNCTIONAL ENZYME DURING GROWTH. SIMILARITY: BELONGS TO THE RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE LARGE CHAIN FAMILY. CAUTION: REF.2 SEQUENCE WAS INCORRECT.
0.982341+gabPb2663transport permease protein of gamma-aminobutyrate EG11330 FUNCTION: TRANSPORTER FOR GABA. PATHWAY: 4-AMINOBUTYRATE (GABA) DEGRADATION PATHWAY. SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE. SIMILARITY: BELONGS TO THE AMINO ACID PERMEASE FAMILY.
ygaEb2664putative transcriptional regulator EG12386 SIMILARITY: BELONGS TO THE GNTR FAMILY OF TRANSCRIPTIONAL REGULATORS. STRONG, TO P.CEPACIA HYPOTHETICAL PROTEIN IN BPHA 5'REGION (AC P37335).
0.682047+pheAb2599chorismate mutase-P and prephenate dehydratase EG10707 CATALYTIC ACTIVITY: CHORISMATE = PREPHENATE. CATALYTIC ACTIVITY: PREPHENATE = PHENYLPYRUVATE + H(2)O + CO(2). PATHWAY: L-PHENYLALANINE BIOSYNTHESIS. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: TO OTHER PDT ENZYMES OR DOMAINS.
0.663717+fucRb2805positive regulator of the fuc operon EG10353 FUNCTION: TRANSCRIPTIONAL ACTIVATOR OF THE FUC OPERON. SIMILARITY: BELONGS TO THE DEOR FAMILY OF TRANSCRIPTIONAL REGULATORS.
0.656470-argTb2310lysine-, arginine-, ornithine-binding periplasmic protein EG10072 FUNCTION: THIS PERIPLASMIC BINDING PROTEIN IS INVOLVED IN AN ARGININE TRANSPORT SYSTEM. ARGT AND HISTIDINE-BINDING PROTEIN J (HISJ) INTERACT WITH A COMMON MEMBRANE-BOUND RECEPTOR, HISP. SUBCELLULAR LOCATION: PERIPLASMIC. PTM: PHOSHORYLATED BY ARGK. SIMILARITY: BELONGS TO THE BACTERIAL EXTRACELLULAR SOLUTE-BINDING PROTEIN FAMILY 3.
0.617419+ygiMb3055orf, hypothetical protein EG12434 SIMILARITY: STRONG, TO H.INFLUENZAE HI1605.
ccab3056tRNA nucleotidyl transferase EG10136 FUNCTION: THIS ENZYME CARRIES OUT SYNTHESIS OF THE TRNA CCA TERMINUS WITHOUT THE DIRECTION OF A TEMPLATE USING THE MULTIPLE ACCEPTING AND DONATING SUBSITES WITHIN ITS ACTIVE SITE. CATALYTIC ACTIVITY: ATP + TRNA(N) = PYROPHOSPHATE + TRNA(N+1). MISCELLANEOUS: THIS ENZYME MAY BE IDENTICAL WITH TRNA CYTIDYLYLTRANSFERASE (EC 2.7.7.21). SIMILARITY: BELONGS TO THE TRNA NUCLEOTIDYLTRANSFERASE / POLY(A) POLYMERASE FAMILY.
0.449413+ftnb1905cytoplasmic ferritin (an iron storage protein) EG10921 FUNCTION: IRON-STORAGE PROTEIN. SUBUNIT: OLIGOMER OF 24 SUBUNITS THAT ASSEMBLE INTO A SPHERICAL PROTEIN SHELL (12 +/- 1 NM DIAMETER) WHICH SEQUESTERS AT LEAST 2000 IRON ATOMS. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: BELONGS TO THE FERRITIN FAMILY. PROKARYOTIC SUBFAMILY.
0.432122+ycdXb1034orf, hypothetical protein EG13870 SIMILARITY: TO A.THERMOPHILUM HYPOTHETICAL 27.7 KDA PROTEIN IN XYNA-ALFA INTERGENIC REGION (AC Q44408).
ycdYb1035putative oxidoreductase component EG13871 SIMILARITY: TO H.INFLUENZAE HI1543. SIMILARITY: BELONGS TO THE YCDY/YNFI FAMILY.
ycdZb1036orf, hypothetical protein EG13872 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (POTENTIAL). SIMILARITY: TO E.COLI YAHC.
0.416327+aroHb17043-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible) EG10080 FUNCTION: STEREOSPECIFIC CONDENSATION OF PHOSPHOENOLPYRUVATE (PEP) AND D-ERYTHROSE-4-PHOSPHATE (E4P) GIVING RISE TO 3-DEOXY-D- ARABINO-HEPTULOSONATE-7-PHOSPHATE (DAHP). CATALYTIC ACTIVITY: 7-PHOSPHO-2-DEHYDRO-3-DEOXY-D-ARABINO- HEPTONATE + ORTHOPHOSPHATE = PHOSPHOENOLPYRUVATE + D-ERYTHROSE 4-PHOSPHATE + H(2)O. PATHWAY: FIRST STEP IN THE BIOSYNTHESIS OF CHORISMATE WITHIN THE BIOSYNTHESIS OF AROMATIC AMINO ACIDS (THE SHIKIMATE PATHWAY). MISCELLANEOUS: THERE ARE 3 DAHP SYNTHASES, AROH IS FEEDBACK-INHIBITED BY TRP. THE OTHER 2 DAHP SYNTHASES ARE TYR- AND PHE-SENSITIVE, RESPECTIVELY. SIMILARITY: BELONGS TO CLASS-I DAHP SYNTHETASE FAMILY.
ydiEb1705orf, hypothetical protein EG12391 SIMILARITY: TO Y.ENTEROCOLITICA HEMP.
0.408149+yidLb3680putative ARAC-type regulatory protein EG11707 SIMILARITY: BELONGS TO THE ARAC/XYLS FAMILY OF TRANSCRIPTIONAL REGULATORS.
0.393586+dnaKb0014chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG10241 FUNCTION: PLAYS AN ESSENTIAL ROLE IN THE INITIATION OF PHAGE LAMBDA DNA REPLICATION, WHERE IT ACTS IN AN ATP-DEPENDENT FASHION WITH THE DNAJ PROTEIN TO RELEASE LAMBDA O AND P PROTEINS FROM THE PREPRIMOSOMAL COMPLEX. DNAK IS ALSO INVOLVED IN CHROMOSOMAL DNA REPLICATION, POSSIBLY THROUGH AN ANALOGOUS INTERACTION WITH THE DNAA PROTEIN. ALSO PARTICIPATES ACTIVELY IN THE RESPONSE TO HYPEROSMOTIC SHOCK. PTM: AUTOPHOSPHORYLATED; GRPE INHIBITS THE AUTOPHOSPHORYLATION. MISCELLANEOUS: THE MUTANTS DNAK756(TS), SEG-1 AND SEG-2 CONFER TEMPERATURE SENSITIVITY. SIMILARITY: BELONGS TO THE HEAT SHOCK PROTEIN 70 FAMILY.
dnaJb0015chaperone with DnaK; heat shock protein EG10240 FUNCTION: INTERACTS WITH DNAK, TO DISASSEMBLE A PROTEIN COMPLEX AT THE PHAGE LAMBDA ORIGIN OF REPLICATION. STIMULATES, JOINTLY WITH GRPE, THE ATPASE ACTIVITY OF DNAK. COFACTOR: BINDS TWO ZINC IONS PER MONOMER. SUBUNIT: HOMODIMER. SUBCELLULAR LOCATION: CYTOPLASMIC. INDUCTION: BY HEAT SHOCK UNDER THE CONTROL OF THE HTPR REGULATORY PROTEIN. SIMILARITY: BELONGS TO THE DNAJ FAMILY. SIMILARITY: CONTAINS 1 J DOMAIN. SIMILARITY: CONTAINS 1 CR DOMAIN.
yi81_1b0016IS186 hypothetical protein EG40012 FUNCTION: INVOLVED IN THE TRANSPOSITION OF THE INSERTION SEQUENCE IS186. SIMILARITY: BELONGS TO THE TRANSPOSASE FAMILY 11.
0.279201+b2071b2071orf, hypothetical protein EG14053
0.244903+b2659b2659orf, hypothetical protein EG13523 FUNCTION: MAY BE INVOLVED IN THE CONTROL OF UTILIZATION OF GAMA- AMINOBUTYRIC ACID.
ygaFb2660orf, hypothetical protein EG12387
gabDb2661succinate-semialdehyde dehydrogenase, NADP-dependent activity EG11329 CATALYTIC ACTIVITY: SUCCINATE SEMIALDEHYDE + NAD(P)(+) + H(2)O = SUCCINATE + NAD(P)H. PATHWAY: 4-AMINOBUTYRATE (GABA) DEGRADATION PATHWAY. SIMILARITY: BELONGS TO THE ALDEHYDE DEHYDROGENASES FAMILY.
gabTb26624-aminobutyrate aminotransferase activity EG10361 CATALYTIC ACTIVITY: 4-AMINOBUTANOATE + 2-OXOGLUTARATE = SUCCINATE SEMIALDEHYDE + L-GLUTAMATE. COFACTOR: PYRIDOXAL PHOSPHATE. PATHWAY: 4-AMINOBUTYRATE (GABA) DEGRADATION PATHWAY. SUBUNIT: HOMODIMER. INDUCTION: CATABOLITE REPRESSION BY GLUCOSE (REPRESSION RELIEVED BY GABA). SIMILARITY: BELONGS TO CLASS-III OF PYRIDOXAL-PHOSPHATE-DEPENDENT AMINOTRANSFERASES.
0.234594+yghTb2986orf, hypothetical protein EG13004 SIMILARITY: TO E.COLI YGHR AND YGHS.
0.221524+b1971b1971putative reductase
b1972b1972orf, hypothetical protein
0.209634+tigb0436trigger factor; a molecular chaperone involved in cell division EG11003 FUNCTION: INVOLVED IN PROTEIN EXPORT. ACTS AS A CHAPERONE BY MAINTAINING THE NEWLY SYNTHESIZED PROTEIN IN AN OPEN CONFORMATION. SIMILARITY: BELONGS TO THE FKBP-TYPE PPIASE FAMILY. TIG SUBFAMILY.
0.204239+ycdCb1013putative tet operon regulator EG12301 SIMILARITY: BELONGS TO THE TETR/ACRR FAMILY OF TRANSCRIPTIONAL REGULATORS.
0.201725+yagGb0270putative permease EG13346 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE (POTENTIAL). SIMILARITY: BELONGS TO THE SODIUM:GALACTOSIDE SYMPORTER FAMILY (SGF). STRONG, TO E.COLI YICJ.
yagHb0271putative beta-xylosidase (EC 3.2.1.37) EG13347 CATALYTIC ACTIVITY: HYDROLYSIS OF 1,4-BETA-D-XYLANS SO AS TO REMOVE SUCCESSIVE D-XYLOSE RESIDUES FROM THE NON-REDUCING TERMINI. IT ALSO HYDROLYSES XYLOBIOSE. SIMILARITY: BELONGS TO FAMILY 43 OF GLYCOSYL HYDROLASES. STRONG, TO B.PUMILUS XYNB.
0.200203+b1689b1689orf, hypothetical protein EG13971
b1690b1690putative transport system permease protein EG13972 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE (PROBABLE). SIMILARITY: BELONGS TO THE MAJOR FACILITATOR FAMILY (ALSO KNOWN AS THE DRUG RESISTANCE TRANSLOCASE FAMILY). STRONG, TO YDIN.
0.193717+yfjNb2630putative cell division protein EG13200
yfjOb2631orf, hypothetical protein EG13201
0.189833+yicKb3659two-module transport protein EG11687 FUNCTION: INVOLVED IN THE EFFLUX OF SUGARS. THE PHYSIOLOGICAL ROLE MAY BE THE DETOXIFICATION OF NON-METABOLIZABLE SUGAR ANALOGS. SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE (PROBABLE). SIMILARITY: BELONGS TO THE SET FAMILY OF TRANSPORTERS.
yicLb3660putative permease transporter EG11688 SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN (PROBABLE). SIMILARITY: BELONGS TO THE EAMA TRANSPORTER FAMILY.
0.188751+ybdRb0608putative oxidoreductase EG13537 SIMILARITY: BELONGS TO THE ZINC-CONTAINING ALCOHOL DEHYDROGENASE FAMILY. CLASS-III SUBFAMILY.
b0609b0609orf, hypothetical protein
0.186158+yjeBb4178orf, hypothetical protein EG11212 SIMILARITY: BELONGS TO THE UPF0074 (RFF2) FAMILY.
vacBb4179putative enzyme EG11259 FUNCTION: 3'-5'EXORIBONUCLEASE THAT PARTICIPATES IN AN ESSENTIAL CELL FUNCTION. ACTS NONSPECIFICALLY ON POLY(A), POLY(U) AND RIBOSOMAL RNAS. REQUIRED FOR THE EXPRESSION OF VIRULENCE GENES IN ENTEROINVASIVE STRAINS OF E.COLI. SUBUNIT: MONOMER. SIMILARITY: BELONGS TO THE RIBONUCLEASE II (RNB) FAMILY. SIMILARITY: CONTAINS 1 'S1 MOTIF' DOMAIN.
0.180312-yaaIb0013orf, hypothetical protein EG11513 CAUTION: REF.2 SEQUENCE DIFFERS FROM THAT SHOWN DUE TO TWO FRAMESHIFTS.
0.179079+b1810b1810orf, hypothetical protein EG13515
0.178576+htpGb0473chaperone Hsp90, heat shock protein C 62.5 EG10461 FUNCTION: MOLECULAR CHAPERONE. HAS ATPASE ACTIVITY. SIMILARITY: BELONGS TO THE HEAT SHOCK PROTEIN 90 FAMILY.
0.166807+hrsAb0731protein modification enzyme, induction of ompC EG13235 FUNCTION: INVOLVED IN THERMOINDUCTION OF OMPC. CATALYTIC ACTIVITY: PROTEIN N-PHOSPHOHISTIDINE + SUGAR = PROTEIN HISTIDINE + SUGAR PHOSPHATE. SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. INNER MEMBRANE (POTENTIAL). SIMILARITY: CONTAINS A PTS EIIA DOMAIN. SIMILARITY: CONTAINS A PTS EIIB DOMAIN. SIMILARITY: CONTAINS A PTS EIIC DOMAIN.
ybgGb0732putative sugar hydrolase EG13236
0.163900+amyAb1927cytoplasmic alpha-amylase EG11387 CATALYTIC ACTIVITY: ENDOHYDROLYSIS OF 1,4-ALPHA-GLUCOSIDIC LINKAGES IN OLIGOSACCHARIDES AND POLYSACCHARIDES. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: BELONGS TO FAMILY 13 OF GLYCOSYL HYDROLASES, ALSO KNOWN AS THE ALPHA-AMYLASE FAMILY.
0.158485+cybBb1418cytochrome b(561) EG10172 FUNCTION: B-TYPE DI-HEME CYTOCHROME WITH A MAJOR ALPHA-ABSORPTION PEAK AT 561 NM AND A MINOR PEAK AT 555 NM. THE OXIDATION-REDUCTION POTENTIAL OF THE CYTOCHROME IS ESTIMATED TO BE +20 MV. SUBUNIT: MONOMER. SUBCELLULAR LOCATION: INTEGRAL MEMBRANE PROTEIN. SIMILARITY: BELONGS TO THE CYTOCHROME B561 FAMILY.
0.157213+yacAb0097orf, hypothetical protein EG11087
secAb0098preprotein translocase; secretion protein EG10936 FUNCTION: INVOLVED IN PROTEIN EXPORT. INTERACTS WITH THE SECY/SECE SUBUNITS. SECA HAS A CENTRAL ROLE IN COUPLING THE HYDROLYSIS OF ATP TO THE TRANSFER OF PRE-SECRETORY PERIPLASMIC AND OUTER MEMBRANE PROTEINS ACROSS THE MEMBRANE. SUBUNIT: PART OF THE PROKARYOTIC PROTEIN TRANSLOCATION APPARATUS WHICH COMPRISE SECA, SECB, SECD, SECE, SECF, SECG AND SECY. SUBCELLULAR LOCATION: CYTOPLASMIC SIDE OF PLASMA MEMBRANE. SIMILARITY: BELONGS TO THE SECA FAMILY.
mutTb00997,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions EG10626 FUNCTION: INVOLVED IN THE GO SYSTEM RESPONSIBLE FOR REMOVING AN OXIDATIVELY DAMAGED FORM OF GUANINE (7,8-DIHYDRO-8-OXOGUANINE) FROM DNA AND THE NUCLEOTIDE POOL. 8-OXO-DGTP IS INSERTED OPPOSITE DA AND DC RESIDUES OF TEMPLATE DNA WITH ALMOST EQUAL EFFICIENCY THUS LEADING TO A.T TO G.C TRANSVERSIONS. MUTT SPECIFICALLY DEGRADES 8-OXO-DGTP TO THE MONOPHOSPHATE. CATALYTIC ACTIVITY: 8-OXO-DGTP + H(2)O = 8-OXO-DGMP + PYROPHOSPHATE. COFACTOR: REQUIRES MAGNESIUM. SUBUNIT: MONOMER. SIMILARITY: BELONGS TO THE NUDIX HYDROLASE FAMILY.
0.156575+ssbb4059ssDNA-binding protein EG10976 FUNCTION: THIS PROTEIN IS ESSENTIAL FOR REPLICATION OF THE CHROMOSOMES AND ITS SINGLE-STRANDED DNA PHAGES. IT IS ALSO INVOLVED IN DNA RECOMBINATION AND REPAIR. SUBUNIT: HOMOTETRAMER. SIMILARITY: BELONGS TO THE SSB FAMILY.
0.155769+yibOb3612putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase EG12296 FUNCTION: KEY ENZYME OF PRIMARY CARBON METABOLISM (BY SIMILARITY). CATALYTIC ACTIVITY: 2-PHOSPHOGLYCERATE = 3-PHOSPHOGLYCERATE. SIMILARITY: HIGH TO OTHER BPG-INDEPENDENT PGAM; SOME, TO THE ALKALINE PHOSPHATASE FAMILY OF ENZYMES.
yibPb3613putative membrane protein EG12297 SIMILARITY: STRONG, TO H.INFLUENZAE HI0756.
yibQb3614orf, hypothetical protein EG12298 SIMILARITY: STRONG, TO H.INFLUENZAE HI0755.
0.154947+b1725b1725orf, hypothetical protein EG13986 SIMILARITY: BELONGS TO THE FRUCTOSAMINE KINASE FAMILY.
0.151596+cmkb0910cytidylate kinase EG11265 FUNCTION: ATP, DATP, AND GTP ARE EQUALLY EFFECTIVE AS PHOSPHATE DONORS. CMP AND DCMP ARE THE BEST PHOSPHATE ACCEPTORS. CATALYTIC ACTIVITY: ATP + CMP = ADP + CDP. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: BELONGS TO THE CYTIDYLATE KINASE FAMILY. SUBFAMILY 1.
rpsAb091130S ribosomal subunit protein S1 EG10900 FUNCTION: BINDS MRNA; THUS FACILITATING RECOGNITION OF THE INITIATION POINT. IT IS NEEDED TO TRANSLATE MRNA WITH A SHORT SHINE-DALGARNO (SD) PURINE-RICH SEQUENCE. PTM: PHOSPHORYLATED; PROBABLY ON A SERINE. SIMILARITY: BELONGS TO THE S1P FAMILY OF RIBOSOMAL PROTEINS. SIMILARITY: CONTAINS 6 'S1 MOTIF' DOMAINS.
0.147613+rhaSb3905positive regulator for rhaBAD operon EG10843 FUNCTION: POSITIVE ACTIVATOR OF GENES REQUIRED FOR L-RHAMNOSE UTILIZATION, PROBABLY OF THE RHAMNOSE TRANSPORTER GENE (RHAT). SUBUNIT: HOMODIMER. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: BELONGS TO THE ARAC/XYLS FAMILY OF TRANSCRIPTIONAL REGULATORS.
rhaRb3906positive regulator for rhaRS operon EG10842 FUNCTION: ACTIVATOR OF THE L-RHAMNOSE OPERON. RHAR PUTATIVELY AUTOREGULATES ITS SYNTHESIS. SUBUNIT: HOMODIMER. SUBCELLULAR LOCATION: CYTOPLASMIC. SIMILARITY: BELONGS TO THE ARAC/XYLS FAMILY OF TRANSCRIPTIONAL REGULATORS.