Known E. coli regulons

Newly-identified clusters

Consensus

Contributing sequences

Full data set matches

E. coli upstream matches

TGAATAA**AT*CA*ATA*A*TG*AT* argR2 cluster0: dataset matches promoter0
******TACTGTATATATATACAGTA* lexA cluster1: dataset matches promoter1
ACATCT*GACGTCTAAACGTCTA**** metJ cluster2: dataset matches promoter2
*******ACGCAAACGTTT*C*TT*** purR cluster3: dataset matches promoter3
**TAGTATGTTGTAACTAAA******* tus cluster4: dataset matches promoter4
T*ATAAATCTGTCATA*A**T*T***A phoB cluster5: dataset matches promoter5
*********TTGAT*TA*ATCAATTT* fnr cluster6: dataset matches promoter6
*AATGATAAT*ATT*TCATT**CATTT fur cluster7: dataset matches promoter7
TTATTTTA*****CGAAAAAA****T* nagC cluster8: dataset matches promoter8
CTGAA*CG*TTCAGC************ fruR cluster9: dataset matches promoter9
***AA*TGTGAT*****TCACA*T*** crp cluster10: dataset matches promoter10
*********ATG*ATAAA*AT*CA*T* argR cluster11: dataset matches promoter11
***GTTAA*TA*ATGT*A********* arcA cluster12: dataset matches promoter12
ATTA*A**AACTAAT**G**A***A*T gcvA cluster13: dataset matches promoter13
T************TGTGGATAA****G dnaA cluster14: dataset matches promoter14
*TGTAA****A**TTTACA******** tyrR cluster15: dataset matches promoter15
******TATG**CG**A*C***CATT* glpR cluster16: dataset matches promoter16
*******GTACTAGTTAACTAGT*C** trpR cluster17: dataset matches promoter17
*TA***A*A***A**AA**AAAAA*** carP cluster18: dataset matches promoter18
**TGTAA*CG*TT*CA**AA******* galR cluster19: dataset matches promoter19
***A*CTGGT**GA**AGT**A***** fadR cluster20: dataset matches promoter20
TC***ATAT*******TACAT***G** modE cluster21: dataset matches promoter21
*G*AAA*****GTAAA***A******* cpxR cluster22: dataset matches promoter22
TGC******A*************A*T* fis cluster23: dataset matches promoter23
*****C*CTT***TT************ ada cluster24: dataset matches promoter24